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New paper in PLOS Biology


New paper in Nature Communications


New paper in PLOS Biology
  1. Ayhan, D.H., Tamer, Y.T., Akbar, M., Bailey, S.M., Wong, M., Daly, S.M., Greenberg, D.E. and Toprak, E., 2016. Sequence-Specific Targeting of Bacterial Resistance Genes Increases Antibiotic Efficacy. PLoS Biol, 14(9), p.e1002552.doi: 10.1371/journal.pbio.1002552

  2. Okumus, B., Landgraf, D., Lai, G.C., Bakhsi, S., Arias-Castro, J.C., Yildiz, S., Huh, D., Fernandez-Lopez, R., Peterson, C.N., Toprak, E. and El Karoui, M., 2016. Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells. Nature communications, 7. doi:10.1038/ncomms11641

  3. Chevereau, G., Dravecká, M., Batur, T., Guvenek, A., Ayhan, D.H., Toprak, E. and Bollenbach, T., 2015. Quantifying the Determinants of Evolutionary Dynamics Leading to Drug Resistance. PLoS Biol, 13(11), p.e1002299. doi:10.1371/journal.pbio.1002299

  4. Palmer, A.C., Toprak, E., Baym, M., Kim, S., Veres, A., Bershtein, S. and Kishony, R., 2015. Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes. Nature communications, 6. doi:10.1038/ncomms8385

  5. Oz, T., Guvenek, A., Yildiz, S., Karaboga, E., Tamer, Y.T., Mumcuyan, N., Ozan, V.B., Senturk, G.H., Cokol, M., Yeh, P., Toprak, E.*, “Selection strength contributes to the complexity of antibiotic resistance evolution”, Molecular Biology and Evolution, (Published online: June 24, 2014, * corresponding author). doi:10.1093/molbev/msu191

  6. B. Okumus, S. Yildiz, E. Toprak*, “Fluidic and microfluidic tools for quantitative systems biology”, Current Opinion in Biotechnology, 2014, * corresponding author. doi:10.1016/j.copbio.2013.08.016

  7. E. Toprak*, A. Veres, S. Yildiz, J.M. Pedraza, R. Chait, J. Paulsson, R. Kishony*, “Building a Morbidostat: An automated high-throughput fluidic system for studying bacterial drug resistance in dynamically sustained drug environments”, Nature Protocols, 2013; E.T. and R.K. are corresponding authors). doi:10.1038/nprot.2013.021

  8. E. Toprak, A. Veres, J.B. Michel, R. Chait, D.L. Hartl, R. Kishony, “Evolutionary paths to strong antibiotic resistance under dynamically sustained drug stress”, Nature Genetics, 2012. doi:10.1038/ng.1034

  9. E. Toprak, C. Kural, P. R. Selvin, "Super-accuracy and super-resolution getting around the diffraction limit.", Methods in Enzymology, 2010.doi: 10.1016/S0076-6879(10)75001-1

  10. E. Toprak, A. Yildiz, M.T. Hoffman, S.S. Rosenfeld, P.R. Selvin, “Why kinesin is so processive”, PNAS, 2009doi: 10.1073/pnas.0808396106

  11. J. G. Reifenberger, E. Toprak, H. Kim, D. Safer, H.L. Sweeney, P.R. Selvin, “Myosin VI undergoes a 180° Power stroke implying an uncoupling of the front lever arm”, PNAS, 2009, (J.G.R. and E.T. contributed equally).doi: 10.1073/pnas.0900005106

  12. E. Toprak, H. Balci, B.H. Blehm, P.R. Selvin, “3D Particle Tracking via Bifocal Imaging”, Nano Letters, 2007.PMID: 17583964

  13. E. Toprak and P.R. Selvin, “New Fluorescent Tools for Watching Nanometer-Scale Conformational Changes of Single Molecules”, Annual Review of Biophysics and Biomolecular Structure, 2007.PMID: 17298239

  14. H. Park, E. Toprak, P. R. Selvin, “Single-molecule fluorescence to study molecular motors”, Quarterly Reviews of Biophysics, 2007.PMID: 17666122

  15. P.R. Selvin, T. Lougheed, M.T. Hoffman, H. Park, H. Balci, B.H. Blehm, E. Toprak, “In vitro & in vivo FIONA and other acronyms for watching molecular motors walk”, Single Molecules: A Laboratory Manual. Cold Spring Harbor Press. Edited by Selvin, P.R., Taekjip Ha, Univ. of Illinois, 2007.doi: 10.1101/pdb.top27

  16. J. Enderlein, E. Toprak, P. R. Selvin, “Polarization effect on position accuracy of fluorophore localization”, Optics Express, 2006.PMID: 19529183

  17. E. Toprak, J. Enderlein, S. Syed, S.A. McKinney, R.G. Petschek, T. Ha, Y.E. Goldman, P.R. Selvin, “Defocused Orientation and Position Imaging of Myosin V”, PNAS, 2006.PMID: 16614073

  18. E. Toprak and O.T. Turgut, “Large N limit of SO(N) Scalar Gauge Theory”, Journal of Mathematical Physics, 2002.

  19. E. Toprak and O.T. Turgut, “Large N limit of SO(N) Gauge Theory of Fermions and Bosons”, Journal of Mathematical Physics, 2002